Original paper
Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks
Abstract
We introduce an R package and a web-based visualization tool for the representation, analysis and integration of epigenomic data in the context of 3D chromatin interaction networks. GARDEN-NET allows for the projection of user-submitted genomic features on pre-loaded chromatin interaction networks, exploiting the functionalities of the ChAseR package to explore the features in combination with chromatin network topology properties. We...
Paper Details
Title
Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks
Published Date
Mar 17, 2020
Journal
Volume
48
Issue
8
Pages
4066 - 4080
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Notes
History