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Complete Genome Sequence of an Avian Metapneumovirus Subtype B Strain from Hungary.

Published on May 7, 2020
· DOI :10.1128/MRA.00177-20
Iryna V. Goraichuk6
Estimated H-index: 6
(ARS: Agricultural Research Service),
Darrell R. Kapczynski28
Estimated H-index: 28
(ARS: Agricultural Research Service)
+ 1 AuthorsDavid L. Suarez63
Estimated H-index: 63
(ARS: Agricultural Research Service)
Abstract
ABSTRACT Avian metapneumoviruses (aMPVs), which have been reported in many countries, cause acute upper respiratory tract disease in chickens and turkeys. Using next-generation sequencing, we report here the complete genome sequence of an aMPV subtype B strain that was isolated from a turkey in Hungary in 1989.
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#1Marta CanutiH-Index: 8
Last. Andrew S. LangH-Index: 26
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Wild birds are recognized viral reservoirs but our understanding about avian viral diversity is limited. We describe here three novel RNA viruses that we identified in oropharyngeal/cloacal swabs collected from wild birds. The complete genome of a novel gull metapneumovirus (GuMPV B29) was determined. Phylogenetic analyses indicated that this virus could represent a novel avian metapneumovirus (AMPV) sub-group, intermediate between AMPV-C and the subgroup of the other AMPVs. This virus was detec...
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#1Paul A. BrownH-Index: 4
#2C. AlléeH-Index: 6
Last. Nicolas EterradossiH-Index: 24
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ABSTRACTTo date, four subgroups of avian metapneumoviruses have been defined (AMPV-A, B, C and D) based on genetic and antigenic differences. The extent of infection in the three principal species ...
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#1Gaya K. Amarasinghe (WashU: Washington University in St. Louis)H-Index: 23
#2María A. Ayllón (UPM: Technical University of Madrid)H-Index: 14
Last. Jens H. Kuhn (NIH: National Institutes of Health)H-Index: 44
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In February 2019, following the annual taxon ratification vote, the order Mononegavirales was amended by the addition of four new subfamilies and 12 new genera and the creation of 28 novel species. This article presents the updated taxonomy of the order Mononegavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV).
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#1Hanna Retallack (UCSF: University of California, San Francisco)H-Index: 6
#2Susan ClubbH-Index: 3
Last. Joseph L. DeRisi (UCSF: University of California, San Francisco)H-Index: 74
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ABSTRACT Here, we report the coding-complete genome sequence of an avian metapneumovirus from a monk parakeet (Myiopsitta monachus), identified by metagenomic next-generation sequencing during an investigation into a disease outbreak in a captive parrot breeding facility. Based on divergence from known strains, this sequence represents a new subgroup of avian metapneumovirus.
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#1Mengmeng Yu (Harbin Veterinary Research Institute)H-Index: 2
#2Lixiao Xing (Harbin Veterinary Research Institute)H-Index: 1
Last. Yulong Gao (Harbin Veterinary Research Institute)H-Index: 19
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Abstract Avian metapneumovirus (aMPV), which has been reported in many countries, causes an acute upper respiratory tract disease in chickens and turkeys. Although aMPV was first detected in China in 1999, there has been no further effort to isolate and characterize the aMPV subtype B (aMPV/B) from field outbreaks. In the present study, we used Vero cells to culture a viral strain, LN16, isolated from chickens with swollen head syndrome. The results of RT-PCR, indirect immunofluorescent antibody...
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#1Claudia Maria Tucciarone (UNIPD: University of Padua)H-Index: 8
#2Giovanni Franzo (UNIPD: University of Padua)H-Index: 11
Last. Mattia Cecchinato (UNIPD: University of Padua)H-Index: 13
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Abstract With increasing frequency, avian Metapneumovirus (aMPV) is reported to induce respiratory signs in chickens. An adequate knowledge of current aMPV prevalence among Italian broilers is lacking, with little information available on its economical and health impact on the poultry industry. In order to collect preliminary data on the epidemiological context of aMPV in broiler flocks, a survey was performed in areas of Northern Italy with high poultry density from 2014 to 2016. Upper respira...
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#1B. K. Rima ('QUB': Queen's University Belfast)H-Index: 15
#2P. Collins (NIH: National Institutes of Health)H-Index: 60
Last. Lin-Fa Wang (NUS: National University of Singapore)H-Index: 63
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The family Pneumoviridae comprises large enveloped negative-sense RNA viruses. This taxon was formerly a subfamily within the Paramyxoviridae, but was reclassified in 2016 as a family with two genera, Orthopneumovirus and Metapneumovirus. Pneumoviruses infect a range of mammalian species, while some members of the Metapneumovirus genus may also infect birds. Some viruses are specific and pathogenic for humans, such as human respiratory syncytial virus and human metapneumovirus. There are no know...
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#1Klaudia Chrzastek (USDA: United States Department of Agriculture)H-Index: 4
#2Dong-Hun Lee (USDA: United States Department of Agriculture)H-Index: 23
Last. Darrell R. Kapczynski (USDA: United States Department of Agriculture)H-Index: 28
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Abstract Current technologies with next generation sequencing have revolutionized metagenomics analysis of clinical samples. To achieve the non-selective amplification and recovery of low abundance genetic sequences, a simplified Sequence-Independent, Single-Primer Amplification (SISPA) technique in combination with MiSeq platform was applied to target negative- and positive-sense single-stranded RNA viral sequences. This method allowed successful sequence assembly of full or near full length av...
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#1Laís S. Rizotto (USP: University of São Paulo)H-Index: 1
#2Guilherme P. Scagion (USP: University of São Paulo)H-Index: 2
Last. Helena Lage Ferreira (USP: University of São Paulo)H-Index: 10
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ABSTRACT We report here the complete genome sequence of an avian metapneumovirus (aMPV) isolated from a tracheal tissue sample of a commercial layer flock. The complete genome sequence of aMPV-A/chicken/Brazil-SP/669/2003 was obtained using MiSeq (Illumina, Inc.) sequencing. Phylogenetic analysis of the complete genome classified the isolate as avian metapneumovirus subtype A.
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#1Claudia Maria Tucciarone (UNIPD: University of Padua)H-Index: 8
#2Marianna Andreopoulou (UNIPD: University of Padua)H-Index: 1
Last. Mattia Cecchinato (UNIPD: University of Padua)H-Index: 13
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SUMMARY Avian metapneumovirus (aMPV) is considered a major pathogen for turkeys but its impact on chicken production is still partially neglected, even though it is fully acknowledged as a primary pathogen in chickens as well. The lack of structured diagnostic surveys does not allow a pervasive understanding of aMPV epidemiology. Being that aMPV is almost an everyday challenge for farmers and veterinarians, a more accurate report of its presence should be detailed, posing the basis for a deep an...
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