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Quantitative methods for metabolomic analyses evaluated in the Children's Health Exposure Analysis Resource (CHEAR).

Published on Jan 22, 2020in Journal of Exposure Science and Environmental Epidemiology3.025
· DOI :10.1038/s41370-019-0162-1
Matthew J. Mazzella13
Estimated H-index: 13
(ISMMS: Icahn School of Medicine at Mount Sinai),
Susan Sumner31
Estimated H-index: 31
(UNC: University of North Carolina at Chapel Hill)
+ 8 AuthorsChris Gennings32
Estimated H-index: 32
(ISMMS: Icahn School of Medicine at Mount Sinai)
Abstract
With advances in technologies that facilitate metabolome-wide analyses, the incorporation of metabolomics in the pursuit of biomarkers of exposure and effect is rapidly evolving in population health studies. However, many analytic approaches are limited in their capacity to address high-dimensional metabolomics data within an epidemiologic framework, including the highly collinear nature of the metabolites and consideration of confounding variables. In this Children’s Health Exposure Analysis Resource (CHEAR) network study, we showcase various analytic approaches that are established as well as novel in the field of metabolomics, including univariate single metabolite models, least absolute shrinkage and selection operator (LASSO), random forest, weighted quantile sum (WQSRS) regression, exploratory factor analysis (EFA), and latent class analysis (LCA). Here, in a Bangladeshi birth cohort (n = 199), we illustrate research questions that can be addressed by each analytic method in the assessment of associations between cord blood metabolites (1H NMR measurements) and birth anthropometric measurements (birth weight and head circumference).
  • References (31)
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#2Ben KinnersleyH-Index: 14
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