Pseudoalignment for metagenomic read assignment
Abstract
Read assignment is an important first step in many metagenomic analysis workflows, providing the basis for identification and quantification of species. However ambiguity among the sequences of many strains makes it difficult to assign reads at the lowest level of taxonomy, and reads are typically assigned to taxonomic levels where they are unambiguous. We explore connections between metagenomic read assignment and the quantification of...
Paper Details
Title
Pseudoalignment for metagenomic read assignment
Published Date
Feb 21, 2017
Journal
Volume
33
Issue
14
Pages
2082 - 2088
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