An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
Abstract
How viruses evolve within hosts can dictate infection outcomes; however, reconstructing this process is challenging. We evaluate our multiplexed amplicon approach, PrimalSeq, to demonstrate how virus concentration, sequencing coverage, primer mismatches, and replicates influence the accuracy of measuring intrahost virus diversity. We develop an experimental protocol and computational tool, iVar, for using PrimalSeq to measure virus diversity...
Paper Details
Title
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
Published Date
Jan 8, 2019
Journal
Volume
20
Issue
1
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