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Published on Aug 19, 2016in Nucleic Acids Research 11.15
Tatiana Tatusova34
Estimated H-index: 34
(NIH: National Institutes of Health),
Michael DiCuccio12
Estimated H-index: 12
(NIH: National Institutes of Health)
+ 7 AuthorsJames Ostell23
Estimated H-index: 23
(NIH: National Institutes of Health)
Recent technological advances have opened unprecedented opportunities for large-scale sequencing and analysis of populations of pathogenic species in disease outbreaks, as well as for large-scale diversity studies aimed at expanding our knowledge across the whole domain of prokaryotes. To meet the challenge of timely interpretation of structure, function and meaning of this vast genetic information, a comprehensive approach to automatic genome annotation is critically needed. In collaboration wi...
607 Citations Source Cite
Published on Jan 22, 2016in PLOS ONE 2.78
Catherine Yoshida7
Estimated H-index: 7
(Public Health Agency of Canada),
Peter Kruczkiewicz8
Estimated H-index: 8
(Public Health Agency of Canada)
+ 4 AuthorsEduardo N. Taboada23
Estimated H-index: 23
(Public Health Agency of Canada)
For nearly 100 years serotyping has been the gold standard for the identification of Salmonella serovars. Despite the increasing adoption of DNA-based subtyping approaches, serotype information remains a cornerstone in food safety and public health activities aimed at reducing the burden of salmonellosis. At the same time, recent advances in whole-genome sequencing (WGS) promise to revolutionize our ability to perform advanced pathogen characterization in support of improved source attribution a...
66 Citations Source Cite
Published on Jul 1, 2014in Antimicrobial Agents and Chemotherapy 4.71
Alessandra Carattoli54
Estimated H-index: 54
(ISS: Istituto Superiore di Sanità),
Ea Zankari9
Estimated H-index: 9
+ 5 AuthorsHenrik Hasman27
Estimated H-index: 27
In the work presented here, we designed and developed two easy-to-use Web tools for in silico detection and characterization of whole-genome sequence (WGS) and whole-plasmid sequence data from members of the family Enterobacteriaceae. These tools will facilitate bacterial typing based on draft genomes of multidrug-resistant Enterobacteriaceae species by the rapid detection of known plasmid types. Replicon sequences from 559 fully sequenced plasmids associated with the family Enterobacteriaceae i...
623 Citations Source Cite
Published on Mar 1, 2014in Avian Diseases 1.31
Martha Pulido-Landínez4
Estimated H-index: 4
(National University of Colombia),
Roxana Sánchez-Ingunza5
Estimated H-index: 5
(USDA: United States Department of Agriculture)
+ 1 AuthorsVladimir Pinheiro do Nascimento13
Estimated H-index: 13
(UFRGS: Universidade Federal do Rio Grande do Sul)
SUMMARY A severe outbreak of salmonellosis in commercial brown table egg layers first occurred in Colombia in 2006. From 2008 to 2012, 35 samples collected from commercial layers farms in the states of Cundinamarca, Santander, Bolivar, and San Andres, were positive for Salmonella enterica. Salmonella was isolated from liver and spleen (71.42%), pools of organs (liver, spleen, and ovarian follicles; 25.71%), and drag swabs (2.85%). Serotype was assigned using single nucleotide polymorphisms or DN...
9 Citations Source Cite
Published on Feb 1, 2011in Avian Pathology 1.96
Paul A. Barrow55
Estimated H-index: 55
(University of Nottingham),
O. C. Freitas Neto1
Estimated H-index: 1
(USP: University of São Paulo)
Fowl typhoid and pullorum disease are two distinct septicaemic diseases largely specific to avian species and caused by Salmonella Gallinarum and Salmonella Pullorum, respectively. They were first described more than one century ago. Since their discovery, many efforts have been made to control and prevent their occurrence in commercial farming of birds. However, they remain a serious economic problem to livestock in countries where measures of control are not efficient or in those where the cli...
126 Citations Source Cite
Published on Apr 1, 2003in Molecular Biology and Evolution 14.80
Stephen J. Salipante5
Estimated H-index: 5
(UR: University of Rochester),
Barry G. Hall37
Estimated H-index: 37
(UR: University of Rochester)
The AAC(6') enzymes inactivate aminoglycoside antibiotics by acetylating their substrates at the 6' positron. Based on functional similarity and size similarity, the AAC(6') enzymes have been considered to be members of asingle family. Our phylogenetic analysis shows that the AAC(6') enzymes instead belong to three unrelated families that we now designate as [A], [B], and [C] and that aminoglycoside acetylation at the 6' position has evolved independently at least three times. AAC(6')-Iaa is a t...
24 Citations Source Cite
Published on Sep 1, 1999in Genome Research 9.94
Xiaoqiu Huang27
Estimated H-index: 27
,
Anuradha Madan7
Estimated H-index: 7
We describe the third generation of the CAP sequence assembly program. The CAP3 program includes a number of improvements and new features. The program has a capability to clip 5′ and 3′ low-quality regions of reads. It uses base quality values in computation of overlaps between reads, construction of multiple sequence alignments of reads, and generation of consensus sequences. The program also uses forward–reverse constraints to correct assembly errors and link contigs. Results of CAP3 on four ...
3,981 Citations Source Cite
Published on Feb 1, 1968in Australian Veterinary Journal 0.89
H. E. Biester1
Estimated H-index: 1
,
L. H. Schwarte1
Estimated H-index: 1
Describes symptoms, treatments, and prevention methods for numerous diseases and parasites afflicting poultry.
2,227 Citations Source Cite
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