An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays

Clarence K. Mah; Jill P. Mesirov; Lukas Chavez

doi:https://doi.org/10.12688/f1000research.16338.1

doi.org/10.12688/f1000research.16338.1

An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays

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Volume: 7, Pages: 1897 - 1897

Published: Dec 5, 2018

Abstract

Illumina Infinium DNA methylation arrays are a cost-effective technology to measure DNA methylation at CpG sites genome-wide and across cohorts of normal and cancer samples. While copy number alterations are commonly inferred from array-CGH, SNP arrays, or whole-genome DNA sequencing, Illumina Infinium DNA methylation arrays have been shown to detect copy number alterations at comparable sensitivity. Here we present an accessible,...

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Paper Details

Title

An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays

DOI

doi.org/10.12688/f1000research.16338.1

Published Date

Dec 5, 2018

Journal

F1000Research

Volume

7

Pages

1897 - 1897

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