TOPAZ: asymmetric suffix array neighbourhood search for massive protein databases
Abstract
Protein homology search is an important, yet time-consuming, step in everything from protein annotation to metagenomics. Its application, however, has become increasingly challenging, due to the exponential growth of protein databases. In order to perform homology search at the required scale, many methods have been proposed as alternatives to BLAST that make an explicit trade-off between sensitivity and speed. One such method, SANSparallel,...
Paper Details
Title
TOPAZ: asymmetric suffix array neighbourhood search for massive protein databases
Published Date
Jul 31, 2018
Journal
Volume
19
Issue
1
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