A Novel Heuristic for Data Distribution in Massively Parallel Phylogenetic Inference Using Site Repeats
Published: Dec 1, 2017
Abstract
Continuous advances in molecular sequencing technologies now allow for inferring evolutionary trees (phylogenies) on supercomputers that comprise hundreds to thousands of species at the whole-transcriptome or whole-genome level. The phylogenetic likelihood function (PLF) consumes 90-95% of total execution time in such analyses and is therefore typically parallelized. Recently, the site repeats (SR) technique for substantially accelerating the...
Paper Details
Title
A Novel Heuristic for Data Distribution in Massively Parallel Phylogenetic Inference Using Site Repeats
Published Date
Dec 1, 2017
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