De novo assembly of bacterial transcriptomes from RNA-seq data
Abstract
Transcriptome assays are increasingly being performed by high-throughput RNA sequencing (RNA-seq). For organisms whose genomes have not been sequenced and annotated, transcriptomes must be assembled de novo from the RNA-seq data. Here, we present novel algorithms, specific to bacterial gene structures and transcriptomes, for analysis of bacterial RNA-seq data and de novo transcriptome assembly. The algorithms are implemented in an open source...
Paper Details
Title
De novo assembly of bacterial transcriptomes from RNA-seq data
Published Date
Jan 13, 2015
Journal
Volume
16
Issue
1
Pages
1 - 10
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