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Better models by discarding data

Published on Jul 1, 2013in Acta Crystallographica Section D-biological Crystallography3.227
· DOI :10.1107/S0907444913001121
Kay Diederichs53
Estimated H-index: 53
(University of Konstanz),
P.A. Karplus20
Estimated H-index: 20
(OSU: Oregon State University)
Abstract
In macromolecular X-ray crystallography, typical data sets have substantial multiplicity. This can be used to calculate the consistency of repeated measurements and thereby assess data quality. Recently, the properties of a correlation coefficient, CC1/2, that can be used for this purpose were characterized and it was shown that CC1/2 has superior properties compared with ‘merging’ R values. A derived quantity, CC*, links data and model quality. Using experimental data sets, the behaviour of CC1/2 and the more conventional indicators were compared in two situations of practical importance: merging data sets from different crystals and selectively rejecting weak observations or (merged) unique reflections from a data set. In these situations controlled ‘pairedrefinement’ tests show that even though discarding the weaker data leads to improvements in the merging R values, the refined models based on these data are of lower quality. These results show the folly of such data-filtering practices aimed at improving the merging R values. Interestingly, in all of these tests CC1/2 is the one data-quality indicator for which the behaviour accurately reflects which of the alternative datahandling strategies results in the best-quality refined model. Its properties in the presence of systematic error are documented and discussed.
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