SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Abstract
Transcriptome sequencing has long been the favored method for quickly and inexpensively obtaining a large number of gene sequences from an organism with no reference genome. Owing to the rapid increase in throughputs and decrease in costs of next- generation sequencing, RNA-Seq in particular has become the method of choice. However, the very short reads (e.g. 2 × 90 bp paired ends) from next generation sequencing makes de novo assembly to...
Paper Details
Title
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Published Date
Feb 13, 2014
Journal
Volume
30
Issue
12
Pages
1660 - 1666
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