Published: Aug 2, 2010
Abstract
Growing sequencing and assembly efforts have been met by the advances in high throughput machines. However, the presence of massive amounts of repeats and transposons complicates the assembly process. Given a library of possible repeats, this paper considers the problem of identifying repeats and transposons in the fragments (also called reads) generated from sequencing machines. This is a difficult problem as the locations of the fragments on...
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