Identifying Satellites and Periodic Repetitions in Biological Sequences
Abstract
We present in this paper an algorithm for identifying satellites in DNA sequences. Satellites (simple, micro, or mini) are repeats in number between 30 and as many as 1,000,000 whose lengths vary between 2 and hundreds of base pairs and that appear, with some mutations, in tandem along the sequence. We concentrate here on short to moderately long (up to 30–40 base pairs) approximate tandem repeats where copies may differ up to ϵ = 15–20% from a...
Paper Details
Title
Identifying Satellites and Periodic Repetitions in Biological Sequences
Published Date
Jan 1, 1998
Volume
5
Issue
3
Pages
539 - 553
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