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Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.
Published on May 1, 1999in Nature 41.58
· DOI :10.1038/20601
Karen E. Nelson71
Estimated H-index: 71
(J. Craig Venter Institute),
Rebecca A. Clayton15
Estimated H-index: 15
(J. Craig Venter Institute)
+ 26 AuthorsKaren A. Ketchum22
Estimated H-index: 22
(J. Craig Venter Institute)
Abstract
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
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  • References (43)
  • Cited By (1255)
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References43
Published on Jan 1, 1996
Takakazu Kaneko49
Estimated H-index: 49
,
Satoshi Tabata2
Estimated H-index: 2
1,177 Citations
Published on Nov 1, 1997in Nature 41.58
Hans-Peter Klenk1
Estimated H-index: 1
(J. Craig Venter Institute),
Rebecca A. Clayton15
Estimated H-index: 15
(J. Craig Venter Institute)
+ 48 AuthorsJeremy Peterson30
Estimated H-index: 30
(J. Craig Venter Institute)
1,226 Citations Source Cite
Published on Mar 1, 1998in Nature 41.58
Gerard Deckert1
Estimated H-index: 1
(University of California, San Diego),
Patrick V. Warren4
Estimated H-index: 4
(University of California, San Diego)
+ 12 AuthorsMonette Aujay1
Estimated H-index: 1
(Verenium Corporation)
947 Citations Source Cite
Published on Mar 1, 1994in Microbiological Research 2.78
Milton H. Saier91
Estimated H-index: 91
Three-dimensional structures have been elucidated for very few integral membrane proteins. Computer methods can be used as guides for estimation of solute transport protein structure, function, biogenesis, and evolution. In this paper the application of currently available computer programs to over a dozen distinct families of transport proteins is reviewed. The reliability of sequence-based topological and localization analyses and the importance of sequence and residue conservation to structur...
198 Citations
Published on Oct 1, 1996in Journal of Bacteriology 3.22
P J Lee1
Estimated H-index: 1
(Center for Advanced Biotechnology and Medicine),
Ann M. Stock50
Estimated H-index: 50
(Center for Advanced Biotechnology and Medicine)
As a step towards studying representative members of the two-component family of signal transduction proteins, we have cloned genes encoding a histidine protein kinase and a response regulator from the hyperthermophilic bacterium Thermotoga maritima. The genes have been designated HpkA and drrA, respectively. The deduced HpkA sequence contains all five characteristic histidine protein kinase motifs with the same relative order and spacing found in the mesophilic bacterial proteins. A hydropathy ...
15 Citations Source Cite
Published on Dec 1, 1997in Nature 41.58
Claire M. Fraser78
Estimated H-index: 78
(J. Craig Venter Institute),
Sherwood Casjens46
Estimated H-index: 46
+ 35 AuthorsErin Hickey15
Estimated H-index: 15
(J. Craig Venter Institute)
The genome of the bacterium Borrelia burgdorferi B31, the aetiologic agent of Lyme disease, contains a linear chromosome of 910,725 base pairs and at least 17 linear and circular plasmids with a combined size of more than 533,000 base pairs. The chromosome contains 853 genes encoding a basic set of proteins for DNA replication, transcription, translation, solute transport and energy metabolism, but, like Mycoplasma genitalium, it contains no genes for cellular biosynthetic reactions. Because B. ...
1,662 Citations Source Cite
Published on Nov 1, 1997in Journal of Bacteriology 3.22
D R Smith1
Estimated H-index: 1
,
L A Doucette-Stamm1
Estimated H-index: 1
+ 22 AuthorsK Gilbert1
Estimated H-index: 1
1,025 Citations Source Cite
Published on Jul 28, 1995in Science 41.06
Robert D. Fleischmann36
Estimated H-index: 36
(J. Craig Venter Institute),
Adams2
Estimated H-index: 2
(J. Craig Venter Institute)
+ 7 AuthorsJoseph M. Merrick8
Estimated H-index: 8
(University at Buffalo)
4,784 Citations Source Cite
Published on Jun 1, 1997in Gene 2.50
David Dubnau59
Estimated H-index: 59
(Public Health Research Institute)
Abstract The pathway for binding, processing and transport of transforming DNA into competent cells of Bacillus subtilis is described. The known proteins involved in mediating these processes are reviewed in turn, including several that resemble proteins required for type-IV pilus assembly and function, and those involved in protein secretion. Based on the phenotypes of null mutations in the cognate genes for these proteins, on similarities to other proteins and on membrane localization and topo...
70 Citations Source Cite
Published on May 1, 1996in Molecular Biology and Evolution 10.22
Jean R. Lobry27
Estimated H-index: 27
Analyses of the genomes of three prokaryotes, Escherichia coli, Bacillus subtilis, and Haemophilus injluenzae, revealed a new type of genomic compartmentalization of base frequencies. There was a departure from intrastrand equifrequency between A and T or between C and G, showing that the substitution patterns of the two strands of DNA were asymmetric. The positions of the boundaries between these compartments were found to coincide with the origin and terminus of chromosome replication, and the...
590 Citations Source Cite
Cited By1255
Published on Jan 1, 2009in Methods of Molecular Biology
Olga Zhaxybayeva24
Estimated H-index: 24
(Dalhousie University)
21 Citations Source Cite
Published on Jan 1, 2014
Rajeev K. Azad14
Estimated H-index: 14
(University of North Texas),
Nitish Mishra + 1 AuthorsRakesh Kaundal5
Estimated H-index: 5
(Oklahoma State University–Stillwater)
A large number of bioinformatics methods have been developed in recent years for detecting gene transfers between distantly related or unrelated organisms. These have been mainly classified as parametric and phylogenetic methods. While the former methods have been frequently invoked for detecting recent gene transfers, detection of ancient gene transfers have relied upon phylogenetic methods. Numerous evidences emerging from the applications of these methods have firmly established interspecies ...
Source Cite
Published on Jan 1, 2004
Alice Carolyn McHardy1
Estimated H-index: 1
Diese Arbeit befasst sich mit der Vorhersage von Genen, von Genexpressionsraten und der Detektion und Charakterisierung von horizontal transferierten Genregionen in mikrobiellen Genomen. Diese Themen sind sowohl fur die Annotation als auch fur weiterfuhrende, experimentelle Analysen eines Organismus von Bedeutung. Teile der Arbeit wurden bereits in verschiedenen Fachzeitschriften veroffentlicht. Der Inhalt von Kapitel 1 wird in diesem Jahr in Bioinformatics erscheinen, Kapitel 3 wurde in der ers...
1 Citations
Published on Jan 1, 2001in Journal of Molecular Biology 4.89
Anne Grove25
Estimated H-index: 25
(Louisiana State University),
Lynette Lim1
Estimated H-index: 1
(Louisiana State University)
Published on Jan 1, 2005
Simonetta Gribaldo34
Estimated H-index: 34
,
Patrick Forterre62
Estimated H-index: 62
Simonetta Gribaldo, Patrick ForterreTwo complementary approaches can be applied to try to understand how lifeappeared on our planet. The first, illustrated by Miller’s seminal experiment,consists in trying to reproduce – either theoretically or/and practically – theconditions of primitive Earth, and to figure out which possible scenarios mighthave led from such conditions to the apparition of life as we know it today.This is the type of approach frequently adopted by chemists and physicists. These...
2 Citations Source Cite
Published on May 1, 2000in Biotechnology Letters 1.85
Barbara R. Evans18
Estimated H-index: 18
(Oak Ridge National Laboratory),
Amanda K. Gilman1
Estimated H-index: 1
(Oak Ridge National Laboratory)
+ 1 AuthorsJonathan Woodward21
Estimated H-index: 21
(Oak Ridge National Laboratory)
A cellulase from the thermophile, Thermotoga maritima, hydrolyzed oligosaccharide substrates by an exoglucanase mode of action but acted as an endoglucanase to rapidly reduce the viscosity of the soluble polysaccharides carboxymethylcellulose and barley β-glucan. The Vmax for hydrolysis of the substrate, p-nitrophenyl β-d-cellobioside, was 42 μmol min−1 (mg protein)−1, while that for barley β-glucan was 637. The enzyme had little activity on crystalline cellulose.
11 Citations Source Cite
Published on Jan 1, 2009
Abhiney Jain3
Estimated H-index: 3
(Clemson University)
Thermotoga neapolitana is a marine hyperthermophilic bacterium that ferments various sugars to hydrogen and acetate. In this study, cull peaches were used as carbon source in a defined medium for biohydrogen production and produced 18 % to 25% hydrogen in the headspace. The hydrogen production varied from 6.4-7.7 mmol H2/g peach (dry weight). The hydrogen concentration did not increase after 20 hours of incubation. The final pH decreased to 4.9 after 20 hours. Unautoclaved peach medium can be us...
3 Citations
Published on Jan 1, 2009in Methods of Molecular Biology
Patricia A. Sobecky23
Estimated H-index: 23
,
Tracy H. Hazen12
Estimated H-index: 12
36 Citations Source Cite
View next paperThe complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus