Nicolas Comte
French Institute for Research in Computer Science and Automation
Publications 3
#1Nicolas Comte (IRIA: French Institute for Research in Computer Science and Automation)H-Index: 1
#2Benoit MorelH-Index: 5
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Motivation: Gene and species tree reconciliation methods can be used to root gene trees and correct uncertainties that are due to scarcity of signal in coming from phylogenetic methods based uniquely on multiple sequence alignments. So far, reconciliation tools have not been integrated in standard phylogenetic software and they either lack of performance on certain functions, or usability for biologists. Results: We present Treerecs, a phylogenetic software based on duplication-loss reconciliati...
#1Wandrille DucheminH-Index: 4
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#1Wandrille DucheminH-Index: 4
#2Guillaume Gence (Lyon College)H-Index: 1
Last.Vincent Daubin (Lyon College)H-Index: 34
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MOTIVATION: A reconciliation is an annotation of the nodes of a gene tree with evolutionary events—for example, speciation, gene duplication, transfer, loss, etc.—along with a mapping onto a species tree. Many algorithms and software produce or use reconciliations but often using different reconciliation formats, regarding the type of events considered or whether the species tree is dated or not. This complicates the comparison and communication between different programs. RESULTS: Here, we gath...
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