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Camilla Ferrari
Max Planck Society
8Publications
2H-index
5Citations
Publications 8
Newest
Published on Jan 1, 2019in Nature Communications 11.88
Camilla Ferrari2
Estimated H-index: 2
(MPG: Max Planck Society),
Sebastian Proost17
Estimated H-index: 17
(MPG: Max Planck Society)
+ 9 AuthorsAlisdair R. Fernie106
Estimated H-index: 106
(MPG: Max Planck Society)
Plants have adapted to the diurnal light-dark cycle by establishing elaborate transcriptional programs that coordinate many metabolic, physiological, and developmental responses to the external environment. These transcriptional programs have been studied in only a few species, and their function and conservation across algae and plants is currently unknown. We performed a comparative transcriptome analysis of the diurnal cycle of nine members of Archaeplastida, and we observed that, despite lar...
Published in bioRxiv
Camilla Ferrari2
Estimated H-index: 2
(MPG: Max Planck Society),
Devendra Shivhare1
Estimated H-index: 1
(NTU: Nanyang Technological University)
+ -3 AuthorsTakayuki Tohge50
Estimated H-index: 50
(Nara Institute of Science and Technology)
The lycophyte Selaginella moellendorffii represents early vascular plants and is studied to understand the evolution of higher plant traits such as the vasculature, leaves, stems, roots, and secondary metabolism. However, little is known about the gene expression and transcriptional coordination of Selaginella genes, which precludes us from understanding the evolution of transcriptional programs behind these traits. We here present a gene expression atlas comprising all major organs, tissue type...
Published on Jun 18, 2019in bioRxiv
Camilla Ferrari2
Estimated H-index: 2
(MPG: Max Planck Society),
Marek Mutwil17
Estimated H-index: 17
(MPG: Max Planck Society)
The glaucophyte Cyanophora paradoxa represents the most basal member of the Archaeplastida kingdom, however the function and expression of most of its genes are unknown. This information is needed to uncover how functional gene modules, i.e. groups of genes performing a given function, evolved in the plant kingdom. We have generated a gene expression atlas capturing responses of Cyanophora to various abiotic stresses. This data was included in the CoNekT-Plants database, enabling comparative tra...
Published on Jun 3, 2019in bioRxiv
Jonathan Wei Xiong Ng (NTU: Nanyang Technological University), Qiao Wen Tan (NTU: Nanyang Technological University)+ 1 AuthorsMarek Mutwil17
Estimated H-index: 17
(NTU: Nanyang Technological University)
Almost all organisms coordinate some aspects of their biology through the diurnal cycle. Photosynthetic organisms, and plants especially, have established complex programs that coordinate physiological, metabolic and developmental processes with the changing light. The diurnal regulation of the underlying transcriptional processes is observed when groups of functionally related genes (gene modules) are expressed at a specific time of the day. However, studying the diurnal regulation of these gen...
Published on May 16, 2019in DNA Research 4.00
Dana C. Price19
Estimated H-index: 19
(RU: Rutgers University),
Ursula Goodenough49
Estimated H-index: 49
(WashU: Washington University in St. Louis)
+ 12 AuthorsUgo Cenci7
Estimated H-index: 7
(CNRS: Centre national de la recherche scientifique)
Glaucophyta are members of the Archaeplastida, the founding group of photosynthetic eukaryotes that also includes red algae (Rhodophyta), green algae, and plants (Viridiplantae). Here we present a high-quality assembly, built using long-read sequences, of the ca. 100 Mb nuclear genome of the model glaucophyte Cyanophora paradoxa. We also conducted a quick-freeze deep-etch electron microscopy (QFDEEM) analysis of C. paradoxa cells to investigate glaucophyte morphology in comparison to other organ...
Published on Oct 1, 2018in Plant Journal 5.73
Marcin Janowski2
Estimated H-index: 2
(MPG: Max Planck Society),
Reimo Zoschke11
Estimated H-index: 11
(MPG: Max Planck Society)
+ 12 AuthorsZoran Nikoloski30
Estimated H-index: 30
(MPG: Max Planck Society)
Published on Aug 15, 2018in bioRxiv
Camilla Ferrari2
Estimated H-index: 2
(MPG: Max Planck Society),
Sebastian Proost17
Estimated H-index: 17
(MPG: Max Planck Society)
+ 9 AuthorsAlisdair R. Fernie106
Estimated H-index: 106
(MPG: Max Planck Society)
Plants have adapted to the diurnal light-dark cycle by establishing elaborate transcriptional programs that coordinate innumerable metabolic, physiological, and developmental responses to the external environment. These transcriptional programs have been studied in only a few species, and their function and conservation across algae and plants is currently unknown. We performed a comparative transcriptome analysis of the diurnal cycle of nine members of Archaeplastida, and we observed that, desp...
Published in bioRxiv
Camilla Ferrari2
Estimated H-index: 2
(MPG: Max Planck Society),
Sebastian Proost17
Estimated H-index: 17
(MPG: Max Planck Society)
+ -3 AuthorsMarek Mutwil17
Estimated H-index: 17
(NTU: Nanyang Technological University)
Phytoplankton consists of autotrophic, photosynthesizing microorganisms that are a crucial component of freshwater and ocean ecosystems. However, despite being the major primary producers of organic compounds, accounting for half of the photosynthetic activity worldwide and serving as the entry point to the food chain, functions of most of the genes of the model phytoplankton organisms remain unknown. To remedy this, we have gathered publicly available expression data for one chlorophyte, one rh...
Published on Nov 26, 2017in bioRxiv
Marek Mutwil17
Estimated H-index: 17
(MPG: Max Planck Society),
Janowski Marcin (MPG: Max Planck Society)+ 11 AuthorsZoran Nikoloski30
Estimated H-index: 30
(MPG: Max Planck Society)
Plastid ribosomes are very similar in structure and function to ribosomes of their bacterial ancestors. Since ribosome biogenesis is not thermodynamically favourable at biological conditions, it requires activity of many assembly factors. Here, we have characterized a homolog of bacterial rsgA in Arabidopsis thaliana and show that it can complement the bacterial homolog. Functional characterization of a strong mutant in Arabidopsis revealed that the protein is essential for plant viability, whil...
Published on Sep 4, 2017in bioRxiv
Bjoern Oest Hansen2
Estimated H-index: 2
(MPG: Max Planck Society),
Etienne H. Meyer25
Estimated H-index: 25
(MPG: Max Planck Society)
+ 5 AuthorsMarek Mutwil17
Estimated H-index: 17
(MPG: Max Planck Society)
Despite increasing availability of sequenced genomes, accurate characterization of gene functions is needed to close the genotype-phenotype gap. Recent advances in gene function prediction rely on ensemble approaches that integrate the results from multiple inference methods to produce superior predictions. Yet, these developments remain largely unexplored in plants. We present Neighbor Counting Ensemble, a gene function prediction method which integrates eleven gene co-function networks for Ara...
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