Camilla Ferrari
Max Planck Society
7Publications
2H-index
5Citations
Publications 7
Newest
Published on Jan 1, 2019in Nature Communications 12.35
Camilla Ferrari2
Estimated H-index: 2
(Max Planck Society),
Sebastian Proost16
Estimated H-index: 16
(Max Planck Society)
+ 9 AuthorsAlisdair R. Fernie106
Estimated H-index: 106
(Max Planck Society)
Plants have adapted to the diurnal light-dark cycle by establishing elaborate transcriptional programs that coordinate many metabolic, physiological, and developmental responses to the external environment. These transcriptional programs have been studied in only a few species, and their function and conservation across algae and plants is currently unknown. We performed a comparative transcriptome analysis of the diurnal cycle of nine members of Archaeplastida, and we observed that, despite lar...
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Published on Mar 1, 2018in New Phytologist 7.43
Bjoern Oest Hansen2
Estimated H-index: 2
(University of Göttingen),
Etienne H. Meyer24
Estimated H-index: 24
(Max Planck Society)
+ 5 AuthorsMarek Mutwil15
Estimated H-index: 15
(Max Planck Society)
Summary Recent advances in gene function prediction rely on ensemble approaches that integrate results from multiple inference methods to produce superior predictions. Yet, these developments remain largely unexplored in plants. We have explored and compared two methods to integrate 10 gene co-function networks for Arabidopsis thaliana and demonstrate how the integration of these networks produces more accurate gene function predictions for a larger fraction of genes with unknown function. These...
2 Citations Source Cite
Published on Jul 2, 2018in Nucleic Acids Research 11.56
Camilla Ferrari2
Estimated H-index: 2
(Max Planck Society),
Sebastian Proost16
Estimated H-index: 16
(Max Planck Society)
+ 1 AuthorsMarek Mutwil15
Estimated H-index: 15
(Max Planck Society)
Phytoplankton consists of autotrophic, photosynthesizing microorganisms that are a crucial component of freshwater and ocean ecosystems. However, despite being the major primary producers of organic compounds, accounting for half of the photosynthetic activity worldwide and serving as the entry point to the food chain, functions of most of the genes of the model phytoplankton organisms remain unknown. To remedy this, we have gathered publicly available expression data for one chlorophyte, one rh...
2 Citations Source Cite
Published on Oct 1, 2018in Plant Journal 5.78
Marcin Janowski2
Estimated H-index: 2
(Max Planck Society),
Reimo Zoschke11
Estimated H-index: 11
(Max Planck Society)
+ 12 AuthorsZoran Nikoloski30
Estimated H-index: 30
(Max Planck Society)
1 Citations Source Cite
Published on Aug 15, 2018in bioRxiv
Camilla Ferrari2
Estimated H-index: 2
(Max Planck Society),
Sebastian Proost16
Estimated H-index: 16
(Max Planck Society)
+ 9 AuthorsAlisdair R. Fernie106
Estimated H-index: 106
(Max Planck Society)
Plants have adapted to the diurnal light-dark cycle by establishing elaborate transcriptional programs that coordinate innumerable metabolic, physiological, and developmental responses to the external environment. These transcriptional programs have been studied in only a few species, and their function and conservation across algae and plants is currently unknown. We performed a comparative transcriptome analysis of the diurnal cycle of nine members of Archaeplastida, and we observed that, desp...
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Published on Nov 26, 2017in bioRxiv
Marek Mutwil15
Estimated H-index: 15
(Max Planck Society),
Janowski Marcin (Max Planck Society)+ 11 AuthorsZoran Nikoloski30
Estimated H-index: 30
(Max Planck Society)
Plastid ribosomes are very similar in structure and function to ribosomes of their bacterial ancestors. Since ribosome biogenesis is not thermodynamically favourable at biological conditions, it requires activity of many assembly factors. Here, we have characterized a homolog of bacterial rsgA in Arabidopsis thaliana and show that it can complement the bacterial homolog. Functional characterization of a strong mutant in Arabidopsis revealed that the protein is essential for plant viability, whil...
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Published on Sep 4, 2017in bioRxiv
Bjoern Oest Hansen2
Estimated H-index: 2
(Max Planck Society),
Etienne H. Meyer24
Estimated H-index: 24
(Max Planck Society)
+ 5 AuthorsMarek Mutwil15
Estimated H-index: 15
(Max Planck Society)
Despite increasing availability of sequenced genomes, accurate characterization of gene functions is needed to close the genotype-phenotype gap. Recent advances in gene function prediction rely on ensemble approaches that integrate the results from multiple inference methods to produce superior predictions. Yet, these developments remain largely unexplored in plants. We present Neighbor Counting Ensemble, a gene function prediction method which integrates eleven gene co-function networks for Ara...
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