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Chris Duran
University of Melbourne
20Publications
14H-index
5,874Citations
Publications 20
Newest
Published on May 1, 2013in Molecular Ecology Resources 7.06
Chris Duran14
Estimated H-index: 14
(University of Melbourne),
Richa Singhania5
Estimated H-index: 5
(University of Queensland)
+ 2 AuthorsDavid Edwards59
Estimated H-index: 59
(Australian Centre for Plant Functional Genomics)
The public availability of large quantities of gene sequence data provides a valuable resource of the mining of Simple Sequence Repeat (SSR) molecular genetic markers for genetic analysis. These markers are inexpensive, require minimal labour to produce and can frequently be associated with functionally annotated genes. This study presents the characterization of barley EST-SSRs and the identification of putative polymorphic SSRs from EST data. Polymorphic SSRs are distinguished from monomorphic...
14 Citations Source Cite
Published on Jan 1, 2012
Michal T. Lorenc13
Estimated H-index: 13
,
Zoran Boskovic5
Estimated H-index: 5
+ 2 AuthorsDavid Edwards59
Estimated H-index: 59
Genetics and genomics have progressed rapidly in the last decade due in part to the increased automation in the generation of data. Biology is now very much an information science and bioinformatics provides the means to connect biological data to hypotheses. Bioinformatics applications assist with the processing and management of this genetic, genomic and phenotypic data as well as providing interfaces for the interrogation and use of this data for conventional biologists. In this chapter, we d...
4 Citations
Published on Aug 1, 2012in Plant Biotechnology Journal 6.30
Kaitao Lai12
Estimated H-index: 12
(Australian Centre for Plant Functional Genomics),
Chris Duran14
Estimated H-index: 14
+ 11 AuthorsUte Baumann25
Estimated H-index: 25
(Australian Centre for Plant Functional Genomics)
Summary Single nucleotide polymorphisms (SNPs) are the most abundant type of molecular genetic marker and can be used for producing high-resolution genetic maps, marker-trait association studies and marker-assisted breeding. Large polyploid genomes such as wheat present a challenge for SNP discovery because of the potential presence of multiple homoeologs for each gene. AutoSNPdb has been successfully applied to identify SNPs from Sanger sequence data for several species, including barley, rice ...
75 Citations Source Cite
Published on Jun 1, 2012in Bioinformatics 5.48
Matthew Kearse1
Estimated H-index: 1
(University of Queensland),
Richard Moir1
Estimated H-index: 1
(University of Queensland)
+ 11 AuthorsChris Duran14
Estimated H-index: 14
(University of Queensland)
Summary: The two main functions of bioinformatics are the organization and analysis of biological data using computational resources. Geneious Basic has been designed to be an easy-to-use and flexible desktop software application framework for the organization and analysis of biological data, with a focus on molecular sequences and related data types. It integrates numerous industry-standard discovery analysis tools, with interactive visualizations to generate publication-ready images. One key c...
4,969 Citations Source Cite
Published on Jan 1, 2012in Briefings in Functional Genomics 3.78
Hong C. Lee2
Estimated H-index: 2
(University of Queensland),
Kaitao Lai12
Estimated H-index: 12
(University of Queensland)
+ 3 AuthorsDavid Edwards59
Estimated H-index: 59
(University of Queensland)
Genome sequencing has been revolutionized by next-generation technologies, which can rapidly produce vast quantities of data at relatively low cost. With data production now no longer being limited, there is a huge challenge to analyse the data flood and interpret biological meaning. Bioinformatics scientists have risen to the challenge and a large number of software tools and databases have been produced and these continue to evolve with this rapidly advancing field. Here, we outline some of th...
49 Citations Source Cite
Published on Jan 1, 2012in Science & Engineering Faculty
Kaitao Lai12
Estimated H-index: 12
,
Paul J. Berkman15
Estimated H-index: 15
+ 5 AuthorsDavid Edwards59
Estimated H-index: 59
Bread wheat ( Triticum aestivum ) is one of the most important crop plants, globally providing staple food for a large proportion of the human population. However, improvement of this crop has been limited due to its large and complex genome. Advances in genomics are supporting wheat crop improvement. We provide a variety of web-based systems hosting wheat genome and genomic data to support wheat research and crop improvement. WheatGenome.info is an integrated database resource which includes mu...
5 Citations
Published on Jan 1, 2012in Science & Engineering Faculty
Hong C. Lee2
Estimated H-index: 2
,
Kaitao Lai12
Estimated H-index: 12
+ 3 AuthorsDavid Edwards59
Estimated H-index: 59
Free to read on publisher website Genome sequencing has been revolutionized by next-generation technologies, which can rapidly produce vast quantities of data at relatively low cost. With data production now no longer being limited, there is a huge challenge to analyse the data flood and interpret biological meaning. Bioinformatics scientists have risen to the challenge and a large number of software tools and databases have been produced and these continue to evolve with this rapidly advancing ...
Published on Jan 1, 2012in Science & Engineering Faculty
Kaitao Lai12
Estimated H-index: 12
,
Chris Duran14
Estimated H-index: 14
+ 11 AuthorsUte Baumann25
Estimated H-index: 25
Single nucleotide polymorphisms (SNPs) are the most abundant type of molecular genetic marker and can be used for producing high-resolution genetic maps, marker-trait association studies and marker-assisted breeding. Large polyploid genomes such as wheat present a challenge for SNP discovery because of the potential presence of multiple homoeologs for each gene. AutoSNPdb has been successfully applied to identify SNPs from Sanger sequence data for several species, including barley, rice and Bras...
Published on Jan 1, 2011in Science & Engineering Faculty
Paul J. Berkman15
Estimated H-index: 15
,
Adam Skarshewski8
Estimated H-index: 8
+ 14 AuthorsSahana Manoli12
Estimated H-index: 12
The genome of bread wheat ( Triticum aestivum ) is predicted to be greater than 16 Gbp in size and consist predominantly of repetitive elements, making the sequencing and assembly of this genome a major challenge. We have reduced genome sequence complexity by isolating chromosome arm 7DS and applied second-generation technology and appropriate algorithmic analysis to sequence and assemble low copy and genic regions of this chromosome arm. The assembly represents approximately 40% of the chromoso...
Published on Jan 1, 2011
Chris Duran14
Estimated H-index: 14
,
Zoran Boskovic5
Estimated H-index: 5
+ 1 AuthorsDavid Edwards59
Estimated H-index: 59
4 Citations
12