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Emre H Brookes
University of Texas Health Science Center at San Antonio
MiddlewareChemistrySoftwareAnalytical UltracentrifugationComputer science
47Publications
17H-index
950Citations
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Publications 47
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Last. David FushmanH-Index: 1
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#1Samuel Bowerman (IIT: Illinois Institute of Technology)H-Index: 4
#2Joseph E. Curtis (NIST: National Institute of Standards and Technology)H-Index: 22
Last. Jeff Wereszczynski (IIT: Illinois Institute of Technology)H-Index: 16
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Abstract Many biomolecular complexes exist in a flexible ensemble of states in solution that is necessary to perform their biological function. Small-angle scattering (SAS) measurements are a popular method for characterizing these flexible molecules because of their relative ease of use and their ability to simultaneously probe the full ensemble of states. However, SAS data is typically low dimensional and difficult to interpret without the assistance of additional structural models. In theory,...
1 CitationsSource
#1Emre H Brookes (University of Texas Health Science Center at San Antonio)H-Index: 17
GenApp is an NSF-funded framework for rapid generation of applications including feature rich science gateways. GenApp is being successfully used to produce science gateways wrapping scientific programs. Its organization is designed to simplify the process of adding new features and capabilities to generated applications. A limited set of definition files define application generation. To bring a new executable into GenApp, one creates a single "module" definition file. The executable must run o...
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#1Marius SchmidH-Index: 5
#2Benedikt Häusele (University of Konstanz)H-Index: 1
Last. Helmut Cölfen (University of Konstanz)H-Index: 74
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Asymmetrical flow field-flow fractionation (AF4) is a chromatographic separation technique that can be used for a broad range of particles or macromolecules. As an orthogonal method to size exclusion chromatography (SEC) with a much broader separation size range (1–800 nm) AF4 is gaining importance. However, the data evaluation capacities are far behind in comparison to other techniques like analytical ultracentrifugation (AUC). A program for evaluation of data from AF4 with a coupled multiangle...
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#1Samuel BowermanH-Index: 4
#2Joseph E. Curtis (NIST: National Institute of Standards and Technology)H-Index: 22
view all 5 authors...
Many biomolecular complexes exist in a flexible ensemble of states in solution which are necessary to perform their biological function. Small angle scattering (SAS) measurements are a popular method for characterizing these flexible molecules due to their relative ease of use and ability to simultaneously probe the full ensemble of states. However, SAS data is typically low-dimensional and difficult to interpret without the assistance of additional structural models. In theory, experimental SAS...
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#1Mattia RoccoH-Index: 23
#2Javier PérezH-Index: 22
Last. Emre H BrookesH-Index: 17
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#1Haram Kim (Cornell University)H-Index: 1
#2Emre H Brookes (University of Texas Health Science Center at San Antonio)H-Index: 17
Last. Borries Demeler (University of Texas Health Science Center at San Antonio)H-Index: 43
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Sedimentation velocity experiments performed in the analytical ultracentrifuge are modeled using finite-element solutions of the Lamm equation. During modeling, three fundamental parameters are optimized: the sedimentation coefficients, the diffusion coefficients, and the partial concentrations of all solutes present in a mixture. A general modeling approach consists of fitting the partial concentrations of solutes defined in a two-dimensional grid of sedimentation and diffusion coefficient comb...
1 CitationsSource
#1Emre H Brookes (UTSA: University of Texas at San Antonio)H-Index: 17
#2Mattia RoccoH-Index: 23
The UltraScan SOlution MOdeller (US-SOMO) is a comprehensive, public domain, open-source suite of computer programs centred on hydrodynamic modelling and small-angle scattering (SAS) data analysis and simulation. We describe here the advances that have been implemented since its last official release (#3087, 2017), which are available from release #3141 for Windows, Linux and Mac operating systems. A major effort has been the transition from the legacy Qt3 cross platform software development and...
5 CitationsSource
#1Marlon PierceH-Index: 24
#2Mark A. MusenH-Index: 75
Last. Tony WalkerH-Index: 1
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1 Citations
#1Alexey Savelyev (University of Texas Health Science Center at San Antonio)
#2Emre H Brookes (University of Texas Health Science Center at San Antonio)H-Index: 17
Abstract GenApp is a general tool for rapid deployment of applications in an extensible set of target languages. GenApp builds fully functioning science gateways and standalone GUI applications from collections of definition files and libraries of code fragments. Existing and new GenApp capabilities can be modified and implemented by using special defined GenApp macros. We demonstrate how this strategy works by integration of the OAuth2 user credential management into GenApp framework. Among the...
1 CitationsSource
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